Copyright © 2006 Per Kraulis
| Lecturer: |
Per Kraulis, Ph.D.
Guest professor Center for Molecular and Clinical Medicine (CMCM) Faculty of Medicine Tartu University |
|---|---|
| Date: | Sep-Nov 2006 |
| Time: | Tuesday 14-16 |
| Location: | Room 1024, Biomedicum |
| Credits: | 1 credit point |
The goal of the course is to provide biomedical students with an introduction to bioinformatics, with an emphasis on biomedical aspects. The course consists of lectures with two seminars.
| Date | Lecture | Material | Links |
|---|---|---|---|
| 2006-09-19 | What is bioinformatics? Basic databases and tools | Lecture1.pdf, Lecture1.ppt, amino_acids.xls | EBI, NCBI, Ensembl |
| 2006-09-26 | Sequence searches: BLAST, FASTA | Lecture2.pdf, Lecture2.ppt | EBI FASTA, EBI BLAST, NCBI BLAST |
| 2006-10-03 | Multiple alignments, phylogenetic trees | Lecture3.pdf, Lecture3.ppt, ras-sequences.txt | ClustalW at EBI, Kalign, Sequence logo, UniProt at EBI |
| 2006-10-10 | Protein domains and 3D structure | Lecture4.pdf, Lecture4.ppt | PDB at RCSB, Pfam, UniProt at EBI |
| 2006-10-17 | Seminar: Sequence analysis of a favourite gene | Lecture5.pdf, Lecture5.ppt | unk1-seq.txt, unk2-seq.txt, unk3-seq.txt, unk4-seq.txt, unk5-seq.txt |
| 2006-10-24 | More annotation, Gene Ontology and pathways | Lecture6.pdf, Lecture6.ppt | GO, Protein Atlas, KEGG, BioCyc, Reactome |
| 2006-10-31 | Gene expression data, methods of analysis | Lecture7.pdf, Lecture7.ppt | yeast-genes.txt, GOSt |
| 2006-11-07 | Seminar: Further analysis of a favourite gene | Lecture8.pdf, Lecture8.ppt |